There was a time when I thought desserts and fitness didn’t mix. Every time I craved something sweet, I felt like I had to “cheat” on my diet. That all changed when I started experimenting with macro-friendly baking. One of my biggest wins? This brownie cheesecake recipe.
This is the perfect way to satisfy your sweet tooth while staying on track. It’s got a rich, fudgy brownie base and a creamy cheesecake layer—but with a high-protein twist. I meal prep this all the time, cutting it into squares so I can grab a quick bite after a workout.
The best part? This recipe is gluten-free, refined sugar-free, and can be easily adapted for different fitness goals. Whether you’re bulking, cutting, or going low-carb, I’ve got variations for you.
Table of Contents
Ingredients & Substitutions
Essential Ingredients for the Brownie Layer
To make the fudgy brownie base, you’ll need:
- ½ cup (120g) almond flour – Keeps it gluten-free and adds healthy fats
- ¼ cup (25g) cocoa powder – Gives it that rich chocolate flavor
- ½ scoop (15g) chocolate protein powder – Adds protein without affecting texture
- ¼ tsp salt – Enhances the chocolate taste
- ¼ tsp baking powder – Helps with structure
- 2 tbsp (40g) coconut sugar or monk fruit sweetener – A natural alternative to refined sugar
- 1 large egg – Adds structure
- 2 tbsp (30ml) unsweetened almond milk – Keeps it moist
- 2 tbsp (30g) melted coconut oil – For a fudgy texture
- 1 tsp vanilla extract – Boosts flavor
Essential Ingredients for the Cheesecake Layer
For the protein-packed cheesecake, you’ll need:
- 8 oz (225g) cream cheese (or Greek yogurt for a lighter version)
- ½ cup (120g) plain Greek yogurt – Adds creaminess and protein
- 1 scoop (30g) vanilla protein powder – Sweetens and adds more protein
- 1 large egg – Helps it set properly
- 2 tbsp (30g) honey or sugar-free syrup – A natural sweetener
- 1 tsp vanilla extract – Rounds out the flavor
Healthy Substitutions for Fitness Goals
- For a higher protein version: Add an extra scoop of protein powder in both layers.
- For a lower-carb version: Swap almond flour for coconut flour (but use half the amount).
- For a dairy-free option: Use dairy-free cream cheese and plant-based protein powder.
This ingredient list keeps things simple, nutritious, and high-protein, so you can enjoy every bite guilt-free.
Step-by-Step Instructions

Now that we’ve covered the ingredients, it’s time to bring this brownie cheesecake recipe to life. Follow these steps carefully to get the perfect fudgy brownie base and creamy cheesecake layer.
Preparing the Brownie Layer
1. Mix the Dry Ingredients
In a large bowl, whisk together:
- ½ cup (120g) almond flour
- ¼ cup (25g) cocoa powder
- ½ scoop (15g) chocolate protein powder
- ¼ tsp salt
- ¼ tsp baking powder
Mixing these ingredients first prevents clumping and helps everything blend evenly.
2. Combine the Wet Ingredients
In a separate bowl, whisk together:
- 1 large egg
- 2 tbsp (30ml) unsweetened almond milk
- 2 tbsp (30g) melted coconut oil
- 1 tsp vanilla extract
- 2 tbsp (40g) coconut sugar or monk fruit sweetener
Whisk until smooth. This step ensures a uniform texture and prevents grainy bits of sweetener.
3. Bring It All Together
Slowly pour the wet ingredients into the dry ingredients. Use a spatula to fold everything together until a thick, smooth batter forms.
4. Bake the Brownie Layer
- Preheat your oven to 325°F (163°C).
- Line an 8×8-inch baking pan with parchment paper.
- Pour the brownie batter into the pan and spread it evenly.
- Bake for 10-12 minutes, just until the edges start to set.
Don’t overbake! The brownie layer will continue baking with the cheesecake layer.
Preparing the Cheesecake Layer
1. Mix the Cheesecake Ingredients
In a mixing bowl, beat together:
- 8 oz (225g) cream cheese (or Greek yogurt for a lighter version)
- ½ cup (120g) plain Greek yogurt
- 1 scoop (30g) vanilla protein powder
- 1 large egg
- 2 tbsp (30g) honey or sugar-free syrup
- 1 tsp vanilla extract
Use a hand mixer or whisk until the mixture is smooth and creamy.
2. Assemble & Bake
- Pour the cheesecake mixture gently over the baked brownie layer.
- Spread evenly with a spatula.
- Bake at 325°F (163°C) for 25-30 minutes, until the center is just set.
⏳ Pro Tip: If the edges brown too quickly, cover them loosely with foil.
3. Chill Before Serving
- Let the cheesecake cool at room temperature for 30 minutes.
- Transfer to the fridge and chill for at least 3 hours (overnight is best).
Chilling sets the cheesecake and gives it that ultra-creamy texture.
Nutritional Breakdown
Tracking your macros and calories? Here’s what you get per serving (assuming 9 servings per batch):
Nutrient | Per Serving |
---|---|
Calories | 220 |
Protein | 14g |
Carbs | 18g |
Fats | 10g |
This brownie cheesecake recipe delivers a solid protein punch with a balanced mix of carbs and healthy fats. It’s perfect for post-workout recovery or a guilt-free dessert.
For more macro-friendly desserts, check out this Cottage Cheese Chocolate Mousse. It’s another high-protein, easy-to-make treat!
Tips & Tricks for the Perfect Brownie Cheesecake Recipe
Making the perfect brownie cheesecake recipe isn’t just about following the steps. There are a few key tricks that can take it from good to absolutely amazing.
Avoiding Common Mistakes
Even experienced bakers can run into issues, but here’s how to prevent them:
- Overbaking the brownie layer: If the brownie is too dry before adding the cheesecake, the final result won’t be fudgy. Bake just until the edges are set but the center is still slightly soft.
- Cracks in the cheesecake: This usually happens when the oven temperature is too high or if the cheesecake isn’t cooled properly. Baking at 325°F (163°C) and letting it cool slowly in the oven with the door slightly open can help.
- Using cold ingredients: Cream cheese and eggs should be at room temperature for a smooth, lump-free batter.
Getting the Right Texture
The secret to a perfectly creamy cheesecake layer is not overmixing. If too much air gets incorporated, it can rise too much and then sink as it cools. Mixing on low speed or using a whisk instead of an electric mixer helps prevent this.
For the brownie base, don’t over-stir after adding the dry ingredients—this keeps it fudgy instead of cakey.
Make It Even Better
- Let it chill overnight for the best texture.
- Use parchment paper to easily lift it out of the pan.
- Slice with a warm knife for clean cuts.
Toppings & Pairings for the Best Brownie Cheesecake Recipe

Toppings and sides can take your brownie cheesecake recipe to the next level. Whether you want to boost the protein or add extra flavor, here are some great ideas.
Best Toppings for a Protein Boost
- Greek yogurt drizzle – Mix Greek yogurt with a little protein powder and spread on top.
- Chopped nuts – Almonds, walnuts, or peanuts add crunch and healthy fats.
- Cacao nibs – A great low-sugar alternative to chocolate chips.
Healthy Side Pairings
Want to turn this into a complete snack or post-workout meal? Try these:
- Protein ice cream – A great way to add more protein and keep it macro-friendly.
- Fresh berries – Strawberries or raspberries add natural sweetness.
- A high-protein latte – A great combo for a mid-day energy boost.
For another high-protein dessert, check out this Protein Donuts Healthy Snack Guide for more delicious ideas!
Meal Prep & Storage Tips
When you make this brownie cheesecake recipe, you’ll probably want to prep it ahead of time so you can enjoy a healthy treat all week. Proper storage is key to keeping it fresh, creamy, and delicious.
How to Store in the Fridge
For best results, store your cheesecake in an airtight container or cover it tightly with plastic wrap. Keep it in the fridge for up to 5 days.
- Always let it cool completely before refrigerating.
- Store slices in a single layer to avoid sticking.
- If your fridge dries out desserts, place a damp paper towel inside the container.
Can You Freeze It?
Yes! This brownie cheesecake recipe freezes really well. To freeze:
- Slice it into individual portions.
- Wrap each piece in plastic wrap, then in foil.
- Store in a freezer-safe container or bag.
- Freeze for up to 3 months.
When you’re ready to eat, let it thaw in the fridge overnight or on the counter for about 30 minutes.
How to Meal Prep for the Week

If you love having a healthy dessert on hand, prepping ahead makes life easier. Here’s what I do:
- Bake on Sunday night and chill overnight.
- Slice into portions and store them in small airtight containers.
- Grab one whenever I need a post-workout treat!
For another great meal-prep dessert, check out this Blueberry Protein Muffins Recipe. It’s another high-protein snack that keeps you on track!
Variations for Different Fitness Goals
One of the best things about this brownie cheesecake recipe is how easily it can be adjusted to fit your goals. Whether you’re bulking, cutting, or going low-carb, there’s a version for you!
High-Protein Version
Want even more protein? Here’s how to boost it:
- Add an extra scoop of whey or casein protein to the cheesecake layer.
- Replace almond flour with ground oats for more protein and fiber.
- Use cottage cheese instead of cream cheese for a lower-fat, higher-protein option.
Low-Carb/Keto-Friendly Version
If you’re watching your carb intake, try these swaps:
- Use coconut flour instead of almond flour (but only ¼ cup—it’s more absorbent).
- Replace honey or syrup with liquid stevia or monk fruit.
- Use a sugar-free chocolate drizzle for extra flavor.
Bulking vs. Cutting Modifications
- For bulking: Use full-fat cream cheese and whole milk for extra calories.
- For cutting: Use low-fat cream cheese and skip the added sweetener to reduce calories.
With these easy adjustments, you can enjoy this brownie cheesecake recipe no matter what your goals are!
Frequently Asked Questions (FAQs)
When making this brownie cheesecake recipe, you might run into a few common questions. Here are the answers to help you get the best results every time!
Can I make this dairy-free?
Yes! Swap out the cream cheese for a dairy-free alternative like cashew-based or coconut cream cheese. Use plant-based protein powder instead of whey and replace Greek yogurt with coconut yogurt.
How do I prevent cracks in the cheesecake layer?
Cracks usually happen when the cheesecake cools too fast or when the oven temperature is too high. To prevent this:
– Bake at 325°F (163°C) for gentle cooking.
– Let it cool in the oven with the door slightly open for 30 minutes before moving it to the fridge.
– Avoid overmixing the cheesecake batter, which adds too much air.
Can I make it without protein powder?
Yes! If you want to keep this brownie cheesecake recipe protein-free, just leave out the protein powder and add 1 extra tablespoon of almond flour for structure.
What’s the best way to adjust sweetness without sugar?
If you want a sugar-free version, try using:
– Monk fruit sweetener
– Erythritol
– Liquid stevia (a few drops go a long way!)
Final Thoughts on This Brownie Cheesecake Recipe
This brownie cheesecake recipe is proof that you don’t have to give up dessert to stay on track with your fitness goals. It’s high in protein, easy to make, and completely customizable based on your needs.
Whether you need a post-workout snack, a meal-prep dessert, or just something to satisfy your sweet tooth, this recipe has you covered.
Now it’s your turn! Try making this brownie cheesecake recipe, Happy baking!

Brownie Cheesecake Recipe
Ingredients
Brownie Layer
- ½ cup (120g) almond flour
- ¼ cup (25g) cocoa powder
- ½ scoop (15g) chocolate protein powder
- 1 tbsp salt
- ¼ tbsp baking powder
- 2 tbsp (40g) coconut sugar or monk fruit sweetener
- 1 large egg
- 2 tbsp (30ml) unsweetened almond milk
- 2 tbsp (30g) melted coconut oil
- 1 tbsp vanilla extract
Cheesecake Layer
- 8 oz (225g) cream cheese (or Greek yogurt for a lighter version)
- ½ cup (120g) plain Greek yogurt
- 1 scoop (30g) vanilla protein powder
- 1 large egg
- 2 tbsp (30g) honey or sugar-free syrup
- 1 tbsp vanilla extract
Optional Toppings
- Dark chocolate drizzle
- Fresh berries (strawberries, raspberries, or blueberries)
- Crushed nuts or cacao nibs
Instructions
Prepare the Brownie Layer
- Preheat your oven to 325°F (163°C). Line an 8×8-inch baking pan with parchment paper.
- In a bowl, whisk together almond flour, cocoa powder, protein powder, salt, and baking powder.
- In a separate bowl, whisk the egg, almond milk, melted coconut oil, vanilla extract, and sweetener until smooth.
- Slowly mix the wet ingredients into the dry ingredients until fully combined.
- Pour the brownie batter into the pan and spread evenly.
- Bake for 10-12 minutes, until the edges are set but the center is still soft.
Prepare the Cheesecake Layer
- In a bowl, beat cream cheese (or Greek yogurt), Greek yogurt, protein powder, egg, honey, and vanilla extract until smooth.
- Pour the cheesecake mixture over the baked brownie layer and spread evenly.
Bake & Chill
- Bake at 325°F (163°C) for 25-30 minutes, until the cheesecake is just set.
- Let it cool at room temperature for 30 minutes, then refrigerate for at least 3 hours (overnight is best).
Serve & Store
- Slice and serve cold with optional toppings like dark chocolate drizzle or fresh berries.
- Store in the fridge for up to 5 days or freeze for up to 3 months.